| No | Programme | Mode by | Faculty |
| 1 | Master of Social Sciences | Research | Centre for Core Studies |
| 2 | Master of Applied Oral Science (MAOSc) New | Coursework | Faculty of Dentistry |
| 3 | Master of Economics and Muamalat Administration | Research | Faculty of Economics and Muamalat |
| 4 | Master of Accounting and Syariah Audit | Coursework | |
| 5 | Master of Islamic Banking | Coursework | |
| 6 | Master of Islamic Finance | Coursework | |
| 7 | Master of Muamalat Administration | Coursework | |
| 8 | Master of Muamalat Administration (Halal Product) | Coursework | |
| 9 | Master Of Science In Built Environment New | Research | Faculty of Engineering and Built Environment |
| 10 | Master of Science in Engineering New | Research | |
| 11 | Master of Da’wah and Islamic Management | Research | Faculty of Leadership and Management |
| 12 | Master of Communication (Media Management) | Coursework | |
| 13 | Master of Counseling (Family Counseling) | Coursework | |
| 14 | Master of Counseling (Substance Abuse) | Coursework | |
| 15 | Master of Da’wah and Islamic Leadership | Coursework | |
| 16 | Master of Akidah and Religion Studies | Mixed Mode | |
| 17 | Master of Arabic Communication | Coursework | Faculty of Major Language Studies |
| 18 | Master of Arabic Language (Islamic Literature) | Mixed Mode | |
| 19 | Master of Arabic Language (Translation) | Mixed Mode | |
| 20 | Master in Medical Sciences (Mmedsc) | Mixed Mode | Faculty of Medicine and Health Sciences |
| 21 | Master of Quranic and Sunnah Studies | Research | Faculty of Quranic and Sunnah Studies |
| 22 | Master of Science | Research | Faculty of Science and Technology |
| 23 | Master of Computer Science (Information Security and Assurance) | Mixed Mode | |
| 24 | Master of Science (Actuarial Science) | Mixed Mode | |
| 25 | Master of Science (Financial Mathematics) | Mixed Mode | |
| 26 | Master of Science (Foodomics and Food Technology) | Mixed Mode | |
| 27 | Master of Science (Risk Management) | Mixed Mode | |
| 28 | Master of Comparative Law | Research | Faculty of Syariah and Law |
| 29 | Master of Laws | Research | |
| 30 | Master of Shariah | Research | |
| 31 | Master of Law (International Law) | Coursework | |
| 32 | Master of Islamic Science | Research | Islamic Science Institute |
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